Paul Macklin's Math Cancer Lab Website

Resources

Please find below numerous resources for those interested in mathematical modeling and cancer biology (from the perspective of a modeler). You may also want to look at the open source software page.

Tutorials

Dundee Summer School 2010

Here is a series of 4 talks I gave ranging from basic biology for mathematical modelers, agent model formulation and analysis, patient-specific calibration, and numerical method with simulation results.

Many of these results are in press; I try to indicate the relevant papers and book chapters where possible. As I continue to update my website, I will include better links to the publishers' websites.

  1. Lecture 1: Basic biology for modelers There is an expanded version available in this book chapter.
  2. Lecture 2: An agent-based cell model, with analysis and application to breast cancer (DCIS). This is currently published in this book chapter, this book chapter, this book chapter, and this journal article.
  3. Lecture 3: Parameter estimation and patient-specific calibration. This is currently published in this book chapter, this book chapter, this book chapter, and this journal article.
  4. Lecture 4: Numerical method and simulation results. This is currently published in this book chapter, this book chapter, this book chapter, and this journal article.

Biology and Pathology for Modelers

Here are a few primers that may be helpful for new modelers and students.

  1. Basic ductal carcinoma in situ (DCIS) pathobiology for modelers

Useful research links

Research Groups

University of Dundee Maths Biology Group
[insert more text here]

Journals and related miscellany

NCBI PubMed
PubMed is a searchable database of biological and medical articles hosted by the National Center for Biotechnology Information (NCBI) and the National Institutes of Health (NIH). It tends to have more recent information than the Web of Science.