We have written a series of tutorials for new users to PhysiCell, an open source 3-D (and 2-D) agent-based biological simulation framework for C++ (Ghaffarizadeh et al., 2017, in review). They are there to walk users through various aspects of PhysiCell, such as setting up g++ and writing a sample project.
Getting ready to use PhysiCell
- Setting up a 64-bit gcc environment in Windows.
- Setting up gcc / OpenMP on OSX (MacPorts edition)
Note: We highly recommend using Homebrew instead. (See below).
- Setting up gcc / OpenMP on OSX (Homebrew edition) (outdated)
- Setting up gcc / OpenMP on OSX (Homebrew edition)
Note: This is the preferred method for Mac OSX.